Results
author = "Zeeberg, Barry R"
Mistaken Identifiers: Gene name errors can be introduced inadvertently when using Excel in bioinformatics
Author(s) :
Zeeberg, Barry R
,
Riss, Joseph
,
Kane, David W
,
Bussey, Kimberly J
,
Uchio, Edward
,
Linehan, W Marston
,
Barrett, J Carl
Description :
Repository :
Europe PubMed Central
Language(s) :
English
VennMaster: Area-proportional Euler diagrams for functional GO analysis of microarrays
Author(s) :
Kestler, Hans A
,
Müller, André
,
Kraus, Johann M
,
Buchholz, Malte
,
Gress, Thomas M
,
Liu, Hongfang
,
Kane, David W
,
Zeeberg, Barry R
Description :
Repository :
Europe PubMed Central
Language(s) :
English
Ontogenomic study of the relationship between number of gene splice variants and GO categorization
Author(s) :
Kahn, Ari B.
,
Zeeberg, Barry R.
,
Ryan, Michael C.
,
Jamison, D. Curtis
,
Rockoff, David M.
,
Pommier, Yves
,
Weinstein, John N.
Description :
Motivation: Splice variation plays important roles in evolution and cancer. Different splice variants of a gene may be characteristic of particular cellular processes, subcellular locations or organs. Although several genomic projects have identified splice variants, there have been no large-scale c...
Repository :
Europe PubMed Central
Language(s) :
English
Functional Categories Associated with Clusters of Genes That Are Co-Expressed across the NCI-60 Cancer Cell Lines
Author(s) :
Zeeberg, Barry R.
,
Reinhold, William
,
Snajder, René
,
Thallinger, Gerhard G.
,
Weinstein, John N.
,
Kohn, Kurt W.
Description :
Repository :
Europe PubMed Central
Language(s) :
English
RedundancyMiner: De-replication of redundant GO categories in microarray and proteomics analysis
Author(s) :
Zeeberg Barry R
,
Liu Hongfang
,
Kahn Ari B
,
Ehler Martin
,
Rajapakse Vinodh N
,
Bonner Robert F
,
Brown Jacob D
,
Brooks Brian P
Description :
Abstract
Background
The Gene Ontology (GO) Consortium organizes genes into hierarchical categories based on biological process, molecular function and subcellular localization. Tools such as GoMiner can leverage GO to perform ontological analysis of microarray and proteomics studies...
Repository :
DOAJ-Articles
Language(s) :
English
GoMiner: a resource for biological interpretation of genomic and proteomic data
Author(s) :
Zeeberg, Barry R
,
Feng, Weimin
,
Wang, Geoffrey
,
Wang, May D
,
Fojo, Anthony T
,
Sunshine, Margot
,
Narasimhan, Sudarshan
Description :
GoMiner, a program package that organizes lists of 'interesting' genes for biological
interpretation in the context of the Gene Ontology, has been developed.
Repository :
Europe PubMed Central
Language(s) :
English
Development of Gene Ontology Tool for Biological Interpretation of Genomic and Proteomic Data
Author(s) :
Feng, Weimin
,
Wang, Geoffrey
,
Zeeberg, Barry R.
,
Guo, Kejiao
,
Fojo, Anthony T.
,
Kane, David W.
,
Reinhold, William C.
Description :
We have designed and developed a Gene Ontology based navigation tool, GoMiner, which organizes lists of interesting genes from a microarray or a protein array experiment for biological interpretation. It provides quantitative and statistical output files and useful visualization (e.g., a tree -like ...
Repository :
Europe PubMed Central
Language(s) :
English
RedundancyMiner: De-replication of redundant GO categories in microarray and proteomics analysis
Author(s) :
Zeeberg, Barry R
,
Liu, Hongfang
,
Kahn, Ari B
,
Ehler, Martin
,
Rajapakse, Vinodh N
,
Bonner, Robert F
,
Brown, Jacob D
Description :
Repository :
Europe PubMed Central
Language(s) :
English
High-Throughput GoMiner, an 'industrial-strength' integrative gene ontology tool for interpretation of multiple-microarray experiments, with application to studies of Common Variable Immune Deficiency (CVID)
Author(s) :
Zeeberg, Barry R
,
Qin, Haiying
,
Narasimhan, Sudarshan
,
Sunshine, Margot
,
Cao, Hong
,
Kane, David W
,
Reimers, Mark
Description :
Repository :
Europe PubMed Central
Language(s) :
English
High-Throughput GoMiner, an 'industrial-strength' integrative gene ontology tool for interpretation of multiple-microarray experiments, with application to studies of Common Variable Immune Deficiency (CVID)
Author(s) :
Zeeberg Barry R
,
Qin Haiying
,
Narasimhan Sudarshan
,
Sunshine Margot
,
Cao Hong
,
Kane David W
,
Reimers Mark
,
Stephens Robert M
Description :
Abstract
Background
We previously developed GoMiner, an application that organizes lists of 'interesting' genes (for example, under-and overexpressed genes from a microarray experiment) for biological interpretation in the context of the Gene Ontology. The original version of GoMine...
Repository :
DOAJ-Articles
Language(s) :
English