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author = "Huerta Cepas, Jaime "
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Found 18 documents, displaying page 1 of 2

ETE: a python Environment for Tree Exploration

Author(s) : Huerta-Cepas Jaime , Dopazo Joaquín , Gabaldón Toni
Description :

Abstract

Background

Many bioinformatics analyses, ranging from gene clustering to phylogenetics, produce hierarchical trees as their main result. These are used to represent the relationships among different biological entities, thus facilitating their analysis and interpretation. A...

Repository : DOAJ-Articles
Language(s) : English

ETE: a python Environment for Tree Exploration

Author(s) : Huerta-Cepas, Jaime , Dopazo, Joaquín , Gabaldón, Toni
Description :
Repository : Europe PubMed Central
Language(s) : English

MetaPhOrs: orthology and paralogy predictions from multiple phylogenetic evidence using a consistency-based confidence score

Author(s) : Pryszcz, Leszek P. , Huerta-Cepas, Jaime , Gabaldón, Toni
Description : Reliable prediction of orthology is central to comparative genomics. Approaches based on phylogenetic analyses closely resemble the original definition of orthology and paralogy and are known to be highly accurate. However, the large computational cost associated to these analyses is a limiting fact...
Repository : Europe PubMed Central
Language(s) : English

PhylomeDB: a database for genome-wide collections of gene phylogenies

Author(s) : Huerta-Cepas, Jaime , Bueno, Anibal , Dopazo, Joaquín , Gabaldón, Toni
Description : The complete collection of evolutionary histories of all genes in a genome, also known as phylome, constitutes a valuable source of information. The reconstruction of phylomes has been previously prevented by large demands of time and computer power, but is now feasible thanks to recent developments...
Repository : Europe PubMed Central
Language(s) : English

The human phylome

Author(s) : Huerta-Cepas, Jaime , Dopazo, Hernán , Dopazo, Joaquín , Gabaldón, Toni
Description : The human phylome, which includes evolutionary relationships of all human proteins and their homologs among thirty-nine fully sequenced eukaryotes, is reconstructed.
Repository : Europe PubMed Central
Language(s) : English

The human phylome a large scale phylogenetic study on the human genome evolution

Author(s) : Huerta Cepas, Jaime , Dopazo Blázquez, Joaquín , Universidad Autónoma de MadridDepartamento de Biología Molecular
Description : Tesis doctoral inédita. Universidad Autónoma de Madrid, Facultad de Ciencias, Departamento de Biología Molecular. Fecha de lectura: 07-11-2008 | Bibliogr.: p. 95-100
Repository : Biblos-e Archivo Universidad Autonoma de Madrid
Language(s) : English

From genes to functional classes in the study of biological systems

Author(s) : Al-Shahrour Fátima , Arbiza Leonardo , Dopazo Hernán , Huerta-Cepas Jaime , Mínguez Pablo , Montaner David , Dopazo Joaquín
Description :

Abstract

Background

With the popularisation of high-throughput techniques, the need for procedures that help in the biological interpretation of results has increased enormously. Recently, new procedures inspired in systems biology criteria have started to be developed.

Resul...

Repository : DOAJ-Articles
Language(s) : English

From genes to functional classes in the study of biological systems

Author(s) : Al-Shahrour, Fátima , Arbiza, Leonardo , Dopazo, Hernán , Huerta-Cepas, Jaime , Mínguez, Pablo , Montaner, David , Dopazo, Joaquín
Description :
Repository : Europe PubMed Central
Language(s) : English

Phylemon: a suite of web tools for molecular evolution, phylogenetics and phylogenomics

Author(s) : Tárraga, Joaquín , Medina, Ignacio , Arbiza, Leonardo , Huerta-Cepas, Jaime , Gabaldón, Toni , Dopazo, Joaquín , Dopazo, Hernán
Description : Phylemon is an online platform for phylogenetic and evolutionary analyses of molecular sequence data. It has been developed as a web server that integrates a suite of different tools selected among the most popular stand-alone programs in phylogenetic and evolutionary analysis. It has been conceived...
Repository : Europe PubMed Central
Language(s) : English

Evidence for systems-level molecular mechanisms of tumorigenesis

Author(s) : Hernández Pilar , Huerta-Cepas Jaime , Montaner David , Al-Shahrour Fátima , Valls Joan , Gómez Laia , Capellá Gabriel
Description :

Abstract

Background

Cancer arises from the consecutive acquisition of genetic alterations. Increasing evidence suggests that as a consequence of these alterations, molecular interactions are reprogrammed in the context of highly connected and regulated cellular networks. Coordinated...

Repository : DOAJ-Articles
Language(s) : English
1 2 > >>

Found 18 documents, displaying page 1 of 2