Results
author = "Huerta Cepas, Jaime "
Evidence for systems-level molecular mechanisms of tumorigenesis
Author(s) :
Hernández, Pilar
,
Huerta-Cepas, Jaime
,
Montaner, David
,
Al-Shahrour, Fátima
,
Valls, Joan
,
Gómez, Laia
,
Capellá, Gabriel
Description :
Repository :
Europe PubMed Central
Language(s) :
English
PhylomeDB v3.0: an expanding repository of genome-wide collections of trees, alignments and phylogeny-based orthology and paralogy predictions
Author(s) :
Huerta-Cepas, Jaime
,
Capella-Gutierrez, Salvador
,
Pryszcz, Leszek P.
,
Denisov, Ivan
,
Kormes, Diego
,
Marcet-Houben, Marina
Description :
The growing availability of complete genomic sequences from diverse species has brought about the need to scale up phylogenomic analyses, including the reconstruction of large collections of phylogenetic trees. Here, we present the third version of PhylomeDB (http://phylomeDB.org), a public database...
Repository :
Europe PubMed Central
Language(s) :
English
PeroxisomeDB: a database for the peroxisomal proteome, functional genomics and disease
Author(s) :
Schlüter, Agatha
,
Fourcade, Stéphane
,
Domènech-Estévez, Enric
,
Gabaldón, Toni
,
Huerta-Cepas, Jaime
,
Berthommier, Guillaume
Description :
Peroxisomes are essential organelles of eukaryotic origin, ubiquitously distributed in cells and organisms, playing key roles in lipid and antioxidant metabolism. Loss or malfunction of peroxisomes causes more than 20 fatal inherited conditions. We have created a peroxisomal database () that include...
Repository :
Europe PubMed Central
Language(s) :
English
GEPAS, a web-based tool for microarray data analysis and interpretation
Author(s) :
Tárraga, Joaquín
,
Medina, Ignacio
,
Carbonell, José
,
Huerta-Cepas, Jaime
,
Minguez, Pablo
,
Alloza, Eva
,
Al-Shahrour, Fátima
Description :
Gene Expression Profile Analysis Suite (GEPAS) is one of the most complete and extensively used web-based packages for microarray data analysis. During its more than 5 years of activity it has continuously been updated to keep pace with the state-of-the-art in the changing microarray data analysis a...
Repository :
Europe PubMed Central
Language(s) :
English
CycADS: an annotation database system to ease the development and update of BioCyc databases
Author(s) :
Vellozo, Augusto F.
,
Véron, Amélie S.
,
Baa-Puyoulet, Patrice
,
Huerta-Cepas, Jaime
,
Cottret, Ludovic
,
Febvay, Gérard
Description :
In recent years, genomes from an increasing number of organisms have been sequenced, but their annotation remains a time-consuming process. The BioCyc databases offer a framework for the integrated analysis of metabolic networks. The Pathway tool software suite allows the automated construction of a...
Repository :
Europe PubMed Central
Language(s) :
English
Phylemon 2.0: a suite of web-tools for molecular evolution, phylogenetics, phylogenomics and hypotheses testing
Author(s) :
Sánchez, Rubén
,
Serra, François
,
Tárraga, Joaquín
,
Medina, Ignacio
,
Carbonell, José
,
Pulido, Luis
,
de María, Alejandro
Description :
Phylemon 2.0 is a new release of the suite of web tools for molecular evolution, phylogenetics, phylogenomics and hypotheses testing. It has been designed as a response to the increasing demand of molecular sequence analyses for experts and non-expert users. Phylemon 2.0 has several unique features ...
Repository :
Europe PubMed Central
Language(s) :
English
Next station in microarray data analysis: GEPAS
Author(s) :
Montaner, David
,
Tárraga, Joaquín
,
Huerta-Cepas, Jaime
,
Burguet, Jordi
,
Vaquerizas, Juan M.
,
Conde, Lucía
,
Minguez, Pablo
Description :
The Gene Expression Profile Analysis Suite (GEPAS) has been running for more than four years. During this time it has evolved to keep pace with the new interests and trends in the still changing world of microarray data analysis. GEPAS has been designed to provide an intuitive although powerful web-...
Repository :
Europe PubMed Central
Language(s) :
English
Genome sequence of the pea aphid Acyrthosiphon pisum
Author(s) :
Richards, Stephen
,
Gibbs, Richard A
,
Gerardo, Nicole M
,
Moran, Nancy
,
Nakabachi, Atsushi
,
Richards, Stephen
,
Stern, David
Description :
Aphids are important agricultural pests and also biological models for studies of insect-plant interactions, symbiosis, virus vectoring, and the developmental causes of extreme phenotypic plasticity. Here we present the 464 Mb draft genome assembly of the pea aphid Acyrthosiphon pisum. This first pu...
Repository :
Ghent University Repository
Language(s) :
English